PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4226.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 187aa    MW: 21644.2 Da    PI: 8.8405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4226.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.64e-0844136790
       FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHela 90 
                A++ GF ++k+++ ++ +r+ e   + f+Cs++g+++   +  e+ +++ ++++++C+ +++  +++    +++   w++ + e    HnH+l+
  Dca4226.1  44 AQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-ENPKKKLKTQKCDCRFRIRAVQNYhfvnNKRvvlWNIVTSEtfGYHNHALT 136
                8899***99988765549999**************9998877.666777777777777777644443344222222366665555578999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-544136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSDAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NVIAQDNGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK GVYDPENPKK KLKTQKCDCR FRIRAVQNYH FVNNKRVVLW  120
NIVTSETFGY HNHALTKYKD GHRGYADLDE DEKAFVRQEY SSAVLPRDIR TGLHQKSPDK  180
PQPSTLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793PKKKLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-